fasta_cleaner.RdFunction to convert a FASTA file stored as an object into a vector
fasta_cleaner(fasta_object, parse = TRUE)
| fasta_object | R object with FASTA character data to clean |
|---|---|
| parse | Parse data to character vector? |
dengueseq_fasta <- rentrez::entrez_fetch(db = "nucleotide", id = "NC_001477", rettype = "fasta") fasta_cleaner(dengueseq_fasta, parse = TRUE)#> [1] "A" "G" "T" "T" "G" "T" "T" "A" "G" "T" "C" "T" "A" "C" "G" "T" "G" "G" #> [19] "A" "C" "C" "G" "A" "C" "A" "A" "G" "A" "A" "C" "A" "G" "T" "T" "T" "C" #> [37] "G" "A" "A" "T" "C" "G" "G" "A" "A" "G" "C" "T" "T" "G" "C" "T" "T" "A" #> [55] "A" "C" "G" "T" "A" "G" "T" "T" "C" "T" "A" "A" "C" "A" "G" "T" "T" "T" #> [73] "T" "T" "T" "A" "T" "T" "A" "G" "A" "G" "A" "G" "C" "A" "G" "A" "T" "C" #> [91] "T" "C" "T" "G" "A" "T" "G" "A" "A" "C" "A" "A" "C" "C" "A" "A" "C" "G" #> [109] "G" "A" "A" "A" "A" "A" "G" "A" "C" "G" "G" "G" "T" "C" "G" "A" "C" "C" #> [127] "G" "T" "C" "T" "T" "T" "C" "A" "A" "T" "A" "T" "G" "C" "T" "G" "A" "A" #> [145] "A" "C" "G" "C" "G" "C" "G" "A" "G" "A" "A" "A" "C" "C" "G" "C" "G" "T" #> [163] "G" "T" "C" "A" "A" "C" "T" "G" "T" "T" "T" "C" "A" "C" "A" "G" "T" "T" #> [181] "G" "G" "C" "G" "A" "A" "G" "A" "G" "A" "T" "T" "C" "T" "C" "A" "A" "A" #> [199] "A" "G" "G" "A" "T" "T" "G" "C" "T" "T" "T" "C" "A" "G" "G" "C" "C" "A" #> [217] "A" "G" "G" "A" "C" "C" "C" "A" "T" "G" "A" "A" "A" "T" "T" "G" "G" "T" #> [235] "G" "A" "T" "G" "G" "C" "T" "T" "T" "T" "A" "T" "A" "G" "C" "A" "T" "T" #> [253] "C" "C" "T" "A" "A" "G" "A" "T" "T" "T" "C" "T" "A" "G" "C" "C" "A" "T" #> [271] "A" "C" "C" "T" "C" "C" "A" "A" "C" "A" "G" "C" "A" "G" "G" "A" "A" "T" #> [289] "T" "T" "T" "G" "G" "C" "T" "A" "G" "A" "T" "G" "G" "G" "G" "C" "T" "C" #> [307] "A" "T" "T" "C" "A" "A" "G" "A" "A" "G" "A" "A" "T" "G" "G" "A" "G" "C" #> [325] "G" "A" "T" "C" "A" "A" "A" "G" "T" "G" "T" "T" "A" "C" "G" "G" "G" "G" #> [343] "T" "T" "T" "C" "A" "A" "G" "A" "A" "A" "G" "A" "A" "A" "T" "C" "T" "C" #> [361] "A" "A" "A" "C" "A" "T" "G" "T" "T" "G" "A" "A" "C" "A" "T" "A" "A" "T" #> [379] "G" "A" "A" "C" "A" "G" "G" "A" "G" "G" "A" "A" "A" "A" "G" "A" "T" "C" #> [397] "T" "G" "T" "G" "A" "C" "C" "A" "T" "G" "C" "T" "C" "C" "T" "C" "A" "T" #> [415] "G" "C" "T" "G" "C" "T" "G" "C" "C" "C" "A" "C" "A" "G" "C" "C" "C" "T" #> [433] "G" "G" "C" "G" "T" "T" "C" "C" "A" "T" "C" "T" "G" "A" "C" "C" "A" "C" #> [451] "C" "C" "G" "A" "G" "G" "G" "G" "G" "A" "G" "A" "G" "C" "C" "G" "C" "A" #> [469] "C" "A" "T" "G" "A" "T" "A" "G" "T" "T" "A" "G" "C" "A" "A" "G" "C" "A" #> [487] "G" "G" "A" "A" "A" "G" "A" "G" "G" "A" "A" "A" "A" "T" "C" "A" "C" "T" #> [505] "T" "T" "T" "G" "T" "T" "T" "A" "A" "G" "A" "C" "C" "T" "C" "T" "G" "C" #> [523] "A" "G" "G" "T" "G" "T" "C" "A" "A" "C" "A" "T" "G" "T" "G" "C" "A" "C" #> [541] "C" "C" "T" "T" "A" "T" "T" "G" "C" "A" "A" "T" "G" "G" "A" "T" "T" "T" #> [559] "G" "G" "G" "A" "G" "A" "G" "T" "T" "A" "T" "G" "T" "G" "A" "G" "G" "A" #> [577] "C" "A" "C" "A" "A" "T" "G" "A" "C" "C" "T" "A" "C" "A" "A" "A" "T" "G" #> [595] "C" "C" "C" "C" "C" "G" "G" "A" "T" "C" "A" "C" "T" "G" "A" "G" "A" "C" #> [613] "G" "G" "A" "A" "C" "C" "A" "G" "A" "T" "G" "A" "C" "G" "T" "T" "G" "A" #> [631] "C" "T" "G" "T" "T" "G" "G" "T" "G" "C" "A" "A" "T" "G" "C" "C" "A" "C" #> [649] "G" "G" "A" "G" "A" "C" "A" "T" "G" "G" "G" "T" "G" "A" "C" "C" "T" "A" #> [667] "T" "G" "G" "A" "A" "C" "A" "T" "G" "T" "T" "C" "T" "C" "A" "A" "A" "C" #> [685] "T" "G" "G" "T" "G" "A" "A" "C" "A" "C" "C" "G" "A" "C" "G" "A" "G" "A" #> [703] "C" "A" "A" "A" "C" "G" "T" "T" "C" "C" "G" "T" "C" "G" "C" "A" "C" "T" #> [721] "G" "G" "C" "A" "C" "C" "A" "C" "A" "C" "G" "T" "A" "G" "G" "G" "C" "T" #> [739] "T" "G" "G" "T" "C" "T" "A" "G" "A" "A" "A" "C" "A" "A" "G" "A" "A" "C" #> [757] "C" "G" "A" "A" "A" "C" "G" "T" "G" "G" "A" "T" "G" "T" "C" "C" "T" "C" #> [775] "T" "G" "A" "A" "G" "G" "C" "G" "C" "T" "T" "G" "G" "A" "A" "A" "C" "A" #> [793] "A" "A" "T" "A" "C" "A" "A" "A" "A" "A" "G" "T" "G" "G" "A" "G" "A" "C" #> [811] "C" "T" "G" "G" "G" "C" "T" "C" "T" "G" "A" "G" "A" "C" "A" "C" "C" "C" #> [829] "A" "G" "G" "A" "T" "T" "C" "A" "C" "G" "G" "T" "G" "A" "T" "A" "G" "C" #> [847] "C" "C" "T" "T" "T" "T" "T" "C" "T" "A" "G" "C" "A" "C" "A" "T" "G" "C" #> [865] "C" "A" "T" "A" "G" "G" "A" "A" "C" "A" "T" "C" "C" "A" "T" "C" "A" "C" #> [883] "C" "C" "A" "G" "A" "A" "A" "G" "G" "G" "A" "T" "C" "A" "T" "T" "T" "T" #> [901] "T" "A" "T" "T" "T" "T" "G" "C" "T" "G" "A" "T" "G" "C" "T" "G" "G" "T" #> [919] "A" "A" "C" "T" "C" "C" "A" "T" "C" "C" "A" "T" "G" "G" "C" "C" "A" "T" #> [937] "G" "C" "G" "G" "T" "G" "C" "G" "T" "G" "G" "G" "A" "A" "T" "A" "G" "G" #> [955] "C" "A" "A" "C" "A" "G" "A" "G" "A" "C" "T" "T" "C" "G" "T" "G" "G" "A" #> [973] "A" "G" "G" "A" "C" "T" "G" "T" "C" "A" "G" "G" "A" "G" "C" "T" "A" "C" #> [991] "G" "T" "G" "G" "G" "T" "G" "G" "A" "T" "G" "T" "G" "G" "T" "A" "C" "T" #> [1009] "G" "G" "A" "G" "C" "A" "T" "G" "G" "A" "A" "G" "T" "T" "G" "C" "G" "T" #> [1027] "C" "A" "C" "T" "A" "C" "C" "A" "T" "G" "G" "C" "A" "A" "A" "A" "G" "A" #> [1045] "C" "A" "A" "A" "C" "C" "A" "A" "C" "A" "C" "T" "G" "G" "A" "C" "A" "T" #> [1063] "T" "G" "A" "A" "C" "T" "C" "T" "T" "G" "A" "A" "G" "A" "C" "G" "G" "A" #> [1081] "G" "G" "T" "C" "A" "C" "A" "A" "A" "C" "C" "C" "T" "G" "C" "C" "G" "T" #> [1099] "C" "C" "T" "G" "C" "G" "C" "A" "A" "A" "C" "T" "G" "T" "G" "C" "A" "T" #> [1117] "T" "G" "A" "A" "G" "C" "T" "A" "A" "A" "A" "T" "A" "T" "C" "A" "A" "A" #> [1135] "C" "A" "C" "C" "A" "C" "C" "A" "C" "C" "G" "A" "T" "T" "C" "G" "A" "G" #> [1153] "A" "T" "G" "T" "C" "C" "A" "A" "C" "A" "C" "A" "A" "G" "G" "A" "G" "A" #> [1171] "A" "G" "C" "C" "A" "C" "G" "C" "T" "G" "G" "T" "G" "G" "A" "A" "G" "A" #> [1189] "A" "C" "A" "G" "G" "A" "C" "A" "C" "G" "A" "A" "C" "T" "T" "T" "G" "T" #> [1207] "G" "T" "G" "T" "C" "G" "A" "C" "G" "A" "A" "C" "G" "T" "T" "C" "G" "T" #> [1225] "G" "G" "A" "C" "A" "G" "A" "G" "G" "C" "T" "G" "G" "G" "G" "C" "A" "A" #> [1243] "T" "G" "G" "T" "T" "G" "T" "G" "G" "G" "C" "T" "A" "T" "T" "C" "G" "G" #> [1261] "A" "A" "A" "A" "G" "G" "T" "A" "G" "C" "T" "T" "A" "A" "T" "A" "A" "C" #> [1279] "G" "T" "G" "T" "G" "C" "T" "A" "A" "G" "T" "T" "T" "A" "A" "G" "T" "G" #> [1297] "T" "G" "T" "G" "A" "C" "A" "A" "A" "A" "C" "T" "G" "G" "A" "A" "G" "G" #> [1315] "A" "A" "A" "G" "A" "T" "A" "G" "T" "C" "C" "A" "A" "T" "A" "T" "G" "A" #> [1333] "A" "A" "A" "C" "T" "T" "A" "A" "A" "A" "T" "A" "T" "T" "C" "A" "G" "T" #> [1351] "G" "A" "T" "A" "G" "T" "C" "A" "C" "C" "G" "T" "A" "C" "A" "C" "A" "C" #> [1369] "T" "G" "G" "A" "G" "A" "C" "C" "A" "G" "C" "A" "C" "C" "A" "A" "G" "T" #> [1387] "T" "G" "G" "A" "A" "A" "T" "G" "A" "G" "A" "C" "C" "A" "C" "A" "G" "A" #> [1405] "A" "C" "A" "T" "G" "G" "A" "A" "C" "A" "A" "C" "T" "G" "C" "A" "A" "C" #> [1423] "C" "A" "T" "A" "A" "C" "A" "C" "C" "T" "C" "A" "A" "G" "C" "T" "C" "C" #> [1441] "C" "A" "C" "G" "T" "C" "G" "G" "A" "A" "A" "T" "A" "C" "A" "G" "C" "T" #> [1459] "G" "A" "C" "A" "G" "A" "C" "T" "A" "C" "G" "G" "A" "G" "C" "T" "C" "T" #> [1477] "A" "A" "C" "A" "T" "T" "G" "G" "A" "T" "T" "G" "T" "T" "C" "A" "C" "C" #> [1495] "T" "A" "G" "A" "A" "C" "A" "G" "G" "G" "C" "T" "A" "G" "A" "C" "T" "T" #> [1513] "T" "A" "A" "T" "G" "A" "G" "A" "T" "G" "G" "T" "G" "T" "T" "G" "T" "T" #> [1531] "G" "A" "C" "A" "A" "T" "G" "A" "A" "A" "A" "A" "A" "A" "A" "A" "T" "C" #> [1549] "A" "T" "G" "G" "C" "T" "C" "G" "T" "C" "C" "A" "C" "A" "A" "A" "C" "A" #> [1567] "A" "T" "G" "G" "T" "T" "T" "C" "T" "A" "G" "A" "C" "T" "T" "A" "C" "C" #> [1585] "A" "C" "T" "G" "C" "C" "T" "T" "G" "G" "A" "C" "C" "T" "C" "G" "G" "G" #> [1603] "G" "G" "C" "T" "T" "C" "A" "A" "C" "A" "T" "C" "C" "C" "A" "A" "G" "A" #> [1621] "G" "A" "C" "T" "T" "G" "G" "A" "A" "T" "A" "G" "A" "C" "A" "A" "G" "A" #> [1639] "C" "T" "T" "G" "C" "T" "G" "G" "T" "C" "A" "C" "A" "T" "T" "T" "A" "A" #> [1657] "G" "A" "C" "A" "G" "C" "T" "C" "A" "T" "G" "C" "A" "A" "A" "A" "A" "A" #> [1675] "G" "C" "A" "G" "G" "A" "A" "G" "T" "A" "G" "T" "C" "G" "T" "A" "C" "T" #> [1693] "A" "G" "G" "A" "T" "C" "A" "C" "A" "A" "G" "A" "A" "G" "G" "A" "G" "C" #> [1711] "A" "A" "T" "G" "C" "A" "C" "A" "C" "T" "G" "C" "G" "T" "T" "G" "A" "C" #> [1729] "T" "G" "G" "A" "G" "C" "G" "A" "C" "A" "G" "A" "A" "A" "T" "C" "C" "A" #> [1747] "A" "A" "C" "G" "T" "C" "T" "G" "G" "A" "A" "C" "G" "A" "C" "A" "A" "C" #> [1765] "A" "A" "T" "T" "T" "T" "T" "G" "C" "A" "G" "G" "A" "C" "A" "C" "C" "T" #> [1783] "G" "A" "A" "A" "T" "G" "C" "A" "G" "A" "T" "T" "A" "A" "A" "A" "A" "T" #> [1801] "G" "G" "A" "T" "A" "A" "A" "C" "T" "G" "A" "T" "T" "T" "T" "A" "A" "A" #> [1819] "A" "G" "G" "G" "A" "T" "G" "T" "C" "A" "T" "A" "T" "G" "T" "A" "A" "T" #> [1837] "G" "T" "G" "C" "A" "C" "A" "G" "G" "G" "T" "C" "A" "T" "T" "C" "A" "A" #> [1855] "G" "T" "T" "A" "G" "A" "G" "A" "A" "G" "G" "A" "A" "G" "T" "G" "G" "C" #> [1873] "T" "G" "A" "G" "A" "C" "C" "C" "A" "G" "C" "A" "T" "G" "G" "A" "A" "C" #> [1891] "T" "G" "T" "T" "C" "T" "A" "G" "T" "G" "C" "A" "G" "G" "T" "T" "A" "A" #> [1909] "A" "T" "A" "C" "G" "A" "A" "G" "G" "A" "A" "C" "A" "G" "A" "T" "G" "C" #> [1927] "A" "C" "C" "A" "T" "G" "C" "A" "A" "G" "A" "T" "C" "C" "C" "C" "T" "T" #> [1945] "C" "T" "C" "G" "T" "C" "C" "C" "A" "A" "G" "A" "T" "G" "A" "G" "A" "A" #> [1963] "G" "G" "G" "A" "G" "T" "A" "A" "C" "C" "C" "A" "G" "A" "A" "T" "G" "G" #> [1981] "G" "A" "G" "A" "T" "T" "G" "A" "T" "A" "A" "C" "A" "G" "C" "C" "A" "A" #> [1999] "C" "C" "C" "C" "A" "T" "A" "G" "T" "C" "A" "C" "T" "G" "A" "C" "A" "A" #> [2017] "A" "G" "A" "A" "A" "A" "A" "C" "C" "A" "G" "T" "C" "A" "A" "C" "A" "T" #> [2035] "T" "G" "A" "A" "G" "C" "G" "G" "A" "G" "C" "C" "A" "C" "C" "T" "T" "T" #> [2053] "T" "G" "G" "T" "G" "A" "G" "A" "G" "C" "T" "A" "C" "A" "T" "T" "G" "T" #> [2071] "G" "G" "T" "A" "G" "G" "A" "G" "C" "A" "G" "G" "T" "G" "A" "A" "A" "A" #> [2089] "A" "G" "C" "T" "T" "T" "G" "A" "A" "A" "C" "T" "A" "A" "G" "C" "T" "G" #> [2107] "G" "T" "T" "C" "A" "A" "G" "A" "A" "G" "G" "G" "A" "A" "G" "C" "A" "G" #> [2125] "T" "A" "T" "A" "G" "G" "G" "A" "A" "A" "A" "T" "G" "T" "T" "T" "G" "A" #> [2143] "A" "G" "C" "A" "A" "C" "T" "G" "C" "C" "C" "G" "T" "G" "G" "A" "G" "C" #> [2161] "A" "C" "G" "A" "A" "G" "G" "A" "T" "G" "G" "C" "C" "A" "T" "C" "C" 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