Wrapper function for creating rooted neighbor-joining trees

By Avril Coghlan (2011).

rooted_NJ_tree(alignment, og, type)

Arguments

alignment	Multiple sequence alignment object
og	Outgroup, as quoted string
type	Type of sequencE: "DNA" or "protein"

Details

Uses seqinr::dist.alignment() and ape::nj(), ape::boot.phylo().